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snp genotyping by sequenom massarray maldi-tof mass spectrometry  (Sequenom)

 
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    Sequenom snp genotyping by sequenom massarray maldi-tof mass spectrometry
    Snp Genotyping By Sequenom Massarray Maldi Tof Mass Spectrometry, supplied by Sequenom, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/massarray+maldi-tof+genotyping+system/mass+spectrometry+snp+genotyping+system/bio_rxiv__2025__04__27__649857-385-4-7
    Average 90 stars, based on 1 article reviews
    snp genotyping by sequenom massarray maldi-tof mass spectrometry - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: The Brain-Derived Neurotrophic Factor Val66Met Polymorphism Moderates the Effects of Childhood Abuse on Severity of Depressive Symptoms in a Time-Dependent Manner
    Article Snippet: In brief, DNA was recovered from stabilized saliva samples and the rs6265 polymorphism was genotyped as part of a larger genotyping project with the Sequenom MassARRAY MALDI-TOF genotyping system (Sequenom Inc., San Diego, CA, USA).

    Article Title: Polygenic phenotypic plasticity moderates the effects of severe childhood abuse on depressive symptom severity in adulthood: A 5-year prospective cohort study.
    Article Snippet: Twelve polymorphisms in nine genes along with 60 unlinked ancestry informative markers (AIMs; Supplementary Table S1) were genotyped with the Sequenom MassARRAY MALDI-TOF genotyping system (Sequenom Inc., San Diego, CA) as described in detail elsewhere (Bousman et al., 2013).

    Article Title: Effects of COMT, DRD2, BDNF, and APOE Genotypic Variation on Treatment Efficacy and Cognitive Side Effects of Electroconvulsive Therapy
    Article Snippet: Objectives: The aim of this study was to explore the main and interaction effects of the COMT Val158Met, DRD2 C957T, BDNF Val66Met, and APOE polymorphisms on treatment efficacy and cognitive side effects of electroconvulsive therapy (ECT).. Methods: A total of 117 adult inpatients with a diagnosis of major depressive disorder recruited from 3 hospitals were administered the Montgomery-Äsberg Depression Rating Scale and a cognitive battery assessing global cognition, anterograde memory, executive function, speed and concentration, as well as retrograde memory at baseline and after ECT treatment.. Results: DRD2 C957T heterozygotes had 3.7 (95% confidence interval, 1.13–12.25; P = 0.032) greater odds of remission compared with CC homozygotes.

    Article Title: SELENBP1 expression in the prefrontal cortex of subjects with schizophrenia
    Article Snippet: Samples were genotyped at single-nucleotide polymorphisms (SNPs) rs10788804 and rs2800953 with the Sequenom MassARRAY MALDI-TOF genotyping system (Sequenom, San Diego, CA, USA) using Sequenom iPLEX Gold chemistries, according to manufacturer's instructions.

    Article Title: COMT genotype is associated with differential expression of muscarinic M1 receptors in human cortex.
    Article Snippet: Samples were genotyped for four COMT SNPs and 60 unlinked ancestry informative markers (AIMs) representing three HapMap phase III populations (Northern/Western European, Han Chinese, and Yoruba in Nigeria) with the Sequenom MassARRAY MALDI-TOF genotyping system using Sequenom iPLEX Gold chemistries according to manufacturer’s instructions.

    Article Title: An Interleukin-1 beta (IL1B) haplotype linked with psychosis transition is associated with IL1B gene expression and brain structure.
    Article Snippet: a Melbourne Neuropsychiatry Centre, Department of Psychiatry, The University of Melbourne & Melbourne Health, Carlton South, VIC, Australia b The Cooperative Research Centre (CRC) for Mental Health, VIC, Australia c 1st Department of Psychiatry, Athens University Medical School, Eginition Hospital, Athens, Greece d Schizophrenia Research Laboratory, Neuroscience Research Australia, Barker Street, Sydney, Australia e School of Psychiatry, Faculty of Medicine, University of New South Wales, Sydney, Australia f Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Parkville, VIC, Australia g Centre for Neural Engineering, The University of Melbourne, Carlton, VIC, Australia h NorthWestern Mental Health, Melbourne, Victoria, Australia i Institute of Psychiatry, Psychology, and Neuroscience, King's College London, UK j Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada k Departments of Medical Genetics, Psychiatry, and Physiology and Pharmacology, University of Calgary, Calgary, AB, Canada l Department of Neuroscience & Physiology, Upstate Medical University, Syracuse, New York 13210, USA m Alberta Children's Hospital Research Institute, Calgary, Alberta, Canada

    Article Title: Downregulation of plasma SELENBP1 protein in patients with recent-onset schizophrenia.
    Article Snippet: Genotyping was performed at the Australian Genome Research Facility (Brisbane, Australia) with the Sequenom MassARRAY MALDI-TOF genotyping system using Sequenom iPLEX Gold chemistries according to the manufacturer’s instructions (Sequenom, Inc., San Diego, CA).



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    GT refers to genotype. Genotypes #1‒2 and #13‒14 are GC-biased O . sinensis genotypes, and Genotypes #4‒6 and #15‒17 are AT-biased O . sinensis genotypes. The GC and AT contents of the 17 O . sinensis genotypes are shown in . The underlined sequences in black represent primers for the first-step PCR. Extension primers 067721–477, 067721–531, 067740–324, 067744–324 (RC, reverse complement) and 067740–328 (RC) in brown were used for <t>SNP</t> mass spectrometry <t>genotyping</t> to distinguish between genotypes of O . sinensis . Arrows indicate the directions of the primer extension reactions toward the SNP alleles in brown. “-” refers to an identical base, and spaces refer to unmatched sequence gaps.
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    GT refers to genotype. Genotypes #1‒2 and #13‒14 are GC-biased O . sinensis genotypes, and Genotypes #4‒6 and #15‒17 are AT-biased O . sinensis genotypes. The GC and AT contents of the 17 O . sinensis genotypes are shown in . The underlined sequences in black represent primers for the first-step PCR. Extension primers 067721–477, 067721–531, 067740–324, 067744–324 (RC, reverse complement) and 067740–328 (RC) in brown were used for SNP mass spectrometry genotyping to distinguish between genotypes of O . sinensis . Arrows indicate the directions of the primer extension reactions toward the SNP alleles in brown. “-” refers to an identical base, and spaces refer to unmatched sequence gaps.

    Journal: PLOS ONE

    Article Title: Altered GC- and AT-biased genotypes of Ophiocordyceps sinensis in the stromal fertile portions and ascospores of natural Cordyceps sinensis

    doi: 10.1371/journal.pone.0286865

    Figure Lengend Snippet: GT refers to genotype. Genotypes #1‒2 and #13‒14 are GC-biased O . sinensis genotypes, and Genotypes #4‒6 and #15‒17 are AT-biased O . sinensis genotypes. The GC and AT contents of the 17 O . sinensis genotypes are shown in . The underlined sequences in black represent primers for the first-step PCR. Extension primers 067721–477, 067721–531, 067740–324, 067744–324 (RC, reverse complement) and 067740–328 (RC) in brown were used for SNP mass spectrometry genotyping to distinguish between genotypes of O . sinensis . Arrows indicate the directions of the primer extension reactions toward the SNP alleles in brown. “-” refers to an identical base, and spaces refer to unmatched sequence gaps.

    Article Snippet: Reagents and biochips required for MassARRAY SNP MALDI-TOF MS genotyping were from Sequenom, USA (acquired by Agena Bioscience Company).

    Techniques: Mass Spectrometry, Sequencing

     SNP  extension primers for  MassARRAY MALDI-TOF MS genotyping.

    Journal: PLOS ONE

    Article Title: Altered GC- and AT-biased genotypes of Ophiocordyceps sinensis in the stromal fertile portions and ascospores of natural Cordyceps sinensis

    doi: 10.1371/journal.pone.0286865

    Figure Lengend Snippet: SNP extension primers for MassARRAY MALDI-TOF MS genotyping.

    Article Snippet: Reagents and biochips required for MassARRAY SNP MALDI-TOF MS genotyping were from Sequenom, USA (acquired by Agena Bioscience Company).

    Techniques: Sequencing

    GT refers to genotype. Genotypes #1‒2 and #13‒14 are GC-biased O . sinensis genotypes, and Genotypes #4‒6 and #15‒17 are AT-biased O . sinensis genotypes. The GC and AT contents of the 17 O . sinensis genotypes are shown in . The underlined sequences in black represent primers for the first-step PCR. Extension primers 067721–477, 067721–531, 067740–324, 067744–324 (RC, reverse complement) and 067740–328 (RC) in brown were used for SNP mass spectrometry genotyping to distinguish between genotypes of O . sinensis . Arrows indicate the directions of the primer extension reactions toward the SNP alleles in brown. “-” refers to an identical base, and spaces refer to unmatched sequence gaps.

    Journal: PLOS ONE

    Article Title: Altered GC- and AT-biased genotypes of Ophiocordyceps sinensis in the stromal fertile portions and ascospores of natural Cordyceps sinensis

    doi: 10.1371/journal.pone.0286865

    Figure Lengend Snippet: GT refers to genotype. Genotypes #1‒2 and #13‒14 are GC-biased O . sinensis genotypes, and Genotypes #4‒6 and #15‒17 are AT-biased O . sinensis genotypes. The GC and AT contents of the 17 O . sinensis genotypes are shown in . The underlined sequences in black represent primers for the first-step PCR. Extension primers 067721–477, 067721–531, 067740–324, 067744–324 (RC, reverse complement) and 067740–328 (RC) in brown were used for SNP mass spectrometry genotyping to distinguish between genotypes of O . sinensis . Arrows indicate the directions of the primer extension reactions toward the SNP alleles in brown. “-” refers to an identical base, and spaces refer to unmatched sequence gaps.

    Article Snippet: The MassARRAY SNP MALDI-TOF MS genotyping experiments were performed by a service company, CapitalBio Co., in Beijing, China.

    Techniques: Mass Spectrometry, Sequencing

     SNP  extension primers for  MassARRAY MALDI-TOF MS genotyping.

    Journal: PLOS ONE

    Article Title: Altered GC- and AT-biased genotypes of Ophiocordyceps sinensis in the stromal fertile portions and ascospores of natural Cordyceps sinensis

    doi: 10.1371/journal.pone.0286865

    Figure Lengend Snippet: SNP extension primers for MassARRAY MALDI-TOF MS genotyping.

    Article Snippet: The MassARRAY SNP MALDI-TOF MS genotyping experiments were performed by a service company, CapitalBio Co., in Beijing, China.

    Techniques: Sequencing